PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G480434_P01
Common NameEREB108, LOC103645148
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family ERF
Protein Properties Length: 202aa    MW: 21963.9 Da    PI: 4.8336
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G480434_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP246.11.3e-143381456
                AP2  4 kGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                       +GVr+++ +g+W+AeIr+p++   r + ++g+f +a +Aa a++aa  +++ge
  GRMZM2G480434_P01 33 TGVRFRH-WGKWAAEIRVPRT---REKLWIGTFESARQAALAYDAAVFCFYGE 81
                       6******.**********965...4**********************999886 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003804.0E-223198IPR001471AP2/ERF domain
PROSITE profilePS5103219.2163192IPR001471AP2/ERF domain
SuperFamilySSF541714.9E-163184IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.3E-223292IPR001471AP2/ERF domain
PRINTSPR003672.8E-63243IPR001471AP2/ERF domain
PfamPF008478.4E-93380IPR001471AP2/ERF domain
CDDcd000186.00E-213493No hitNo description
PRINTSPR003672.8E-65470IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0006340anatomyadult vascular leaf
PO:0009025anatomyvascular leaf
PO:0020040anatomyleaf base
PO:0001053developmental stagevascular leaf post-expansion stage
PO:0007003developmental stageIL.03 full inflorescence length reached stage
PO:0007072developmental stageLP.18 eighteen leaves visible stage
Sequence ? help Back to Top
Protein Sequence    Length: 202 aa     Download sequence    Send to blast
MCKDKSALLL EAISSGAAER KARARRQKLS SWTGVRFRHW GKWAAEIRVP RTREKLWIGT  60
FESARQAALA YDAAVFCFYG ERAPKARKPN FPAMPRPEVD EGSRLHLSVA EVKVIAERHA  120
RDVDALLPPM ADPDSAAATD DDLVMAPPPV AVAVDAPSDG AGGPDLDQML SAFDIDAFGA  180
ELDSMTFLVS DDEYYAAEPA CA
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G480434
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G480434_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7276820.0KJ727682.1 Zea mays clone pUT5610 AP2-EREBP transcription factor (EREB108) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008666483.11e-144PREDICTED: ethylene-responsive transcription factor ERF016-like
TrEMBLA0A060D6E21e-144A0A060D6E2_MAIZE; AP2-EREBP transcription factor (Fragment)
STRINGGRMZM2G480434_P011e-144(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP54442555
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31060.12e-22ERF family protein